imx

Below is a demonstration of the features of the imx function

Contents

clear; close all; clc;

Syntax

hf=imx(varargin);

Description

The imx function provides a figure window based GUI for 3D image segmentation

Examples

Example: Segmenting MRI data

Get a 3D image (see als0 dcmFolder2MATobject to import DICOM data)

testCase=2;
switch testCase
    case 1 %MATLAB brain data
        load mri;
        M=squeeze(D); %example image data set
        v=2./[1,1,.4]; %example voxel size
    case 2 %MRI imported from DICOM files, see also HELP_dcmFolder2MATobject
        defaultFolder = fileparts(fileparts(mfilename('fullpath'))); %Set main folder
        pathName=fullfile(defaultFolder,'data','DICOM','KNEE_UTE');
        loadName=fullfile(pathName,'IMDAT','IMDAT.mat');

        IMDAT_struct=load(loadName); %The image data structure
        G = IMDAT_struct.G; %Geometric/spatial information
        v=G.v; %The voxel size
        M= IMDAT_struct.type_1; %The image data
end

Start segmentation using imx

hf=imx(M,v);

GIBBON www.gibboncode.org

Kevin Mattheus Moerman, [email protected]

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License: https://github.com/gibbonCode/GIBBON/blob/master/LICENSE

GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for image segmentation, image-based modeling, meshing, and finite element analysis.

Copyright (C) 2017 Kevin Mattheus Moerman

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.